Project Collaborations

Project:

INF

Research Data Management infrastructure for collaborative data analyses

PI:

Harald Binder | Jan Schmoranzer

In the INF project, we are building a state-of-the-art RDM infrastructure for the TR-CRC, capable of integrating all types of data to optimally support the study of interneuron function in cortical circuits, and creating synergies between projects by facilitating data and model sharing. To this end, the INF project is establishing workflows that harmonize data types to facilitate comparative and collaborative analysis and modeling.

As a focus area, we provide advanced workflows for imaging data, including data acquisition and analysis, to the CRC. This is complemented by training of the groups’ local data managers as well as ongoing support with the goal of improving data curation of the data created, shared and published for the long term.

Graphical Abstract | Smart Figures

Project-Team

Harald Binder

PI

Jan Schmoranzer

PI

Claudia Giuliani

Postdoc (Prof. Binder)

André Lampe

Postdoc (Prof. Schmoranzer)
INF

Identifying biomedical entities for datasets in scientific articles – A 4-step cache-augmented generation approach using GPT-4o and PubTator 3.0

Authors: Claudia Giuliani, Gita Benadi, Felix Engel, Jonas Werner, Manuel Watter, Guido Schwarzer, Olaf Groß, Robert Zeiser, Harald Binder, Klaus Kaier
JMIR Form Res.
2025
INF

Automated Identification of Contextually Relevant Biomedical Entities with Grounded LLMs

Authors: Manuel Watter, Claudia Giuliani, Gita Benadi, Felix Engel, Harald Binder, Klaus Kaier
Sci Rep.
2026
INF

Development and automated deployment of a specialised machine learning schema within a collaborative research centre: an explorative approach using large language models

Authors: Klaus Kaier, Gita Benadi, Sophia Nolde, Cristóbal Tagle Ludwig, Claudia Giuliani, Felix Engel, Manuel Watter, Harald Binder
medRxiv
2025
INF

Identification of biomedical entities from multiple repositories using a specialized metadata schema and search-augmented large language models

Authors: Klaus Kaier, Felix Engel, Gita Benadi, Claudia Giuliani, Manuel Watter, Aref Kalantari, Karin Schuller, Claus-Werner Franzke, Markus Sperandio, Harald Binder
BMC Res Notes
2026
A01| A02| A03| A04| A05| A06| A07| A08| B01| B02| B03| B04| B05| B06| B07| B08| INF| Z01| Z02

A population approach to cortical GABAergic interneuron function

Authors: Johannes J Letzkus, Henning Sprekeler, Harald Binder, Joschka Bödecker, Ilka Diester, Claudio Elgueta, Sabine Grosser, Matthias Haberl, Akos Kulik, Matthew Larkum, Christian Leibold, Christian Madry, Hannah Monyer, James F A Poulet, Jonas-Frederic Sauer, Jan Schmoranzer, Susanne Schreiber, Julia Veit, Silvia Viana da Silva, Andreas Vlachos, Imre Vida, Jörg R P Geiger, Marlene Bartos
Neuron
2026